Kusalik, Anthony J: search on Z-Library

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1

Transcriptome analysis of response to Plasmodiophora brassicae infection in the Arabidopsis shoot and root

Irani, Solmaz, Trost, Brett, Waldner, Matthew, Nayidu, Naghabushana, Tu, Jiangying, Kusalik, Anthony J., Todd, Christopher D., Wei, Yangdou, Bonham-Smith, Peta C.

Journal:

Year:

2018

Language:

english

File:

PDF, 4.23 MB

english, 2018

2

Identification of developmentally-specific kinotypes and mechanisms of Varroa mite resistance through whole-organism, kinome analysis of honeybee

Robertson, Albert J., Trost, Brett, Scruten, Erin, Robertson, Thomas, Mostajeran, Mohammad, Connor, Wayne, Kusalik, Anthony, Griebel, Philip, Napper, Scott

Journal:

Frontiers in Genetics

Year:

2014

Language:

english

File:

PDF, 2.29 MB

english, 2014

3

Clinical and associated inflammatory biomarker features predictive of short-term outcomes in non-systemic juvenile idiopathic arthritis

Rezaei, Elham, Hogan, Daniel, Trost, Brett, Kusalik, Anthony J, Boire, Gilles, Cabral, David A, Campillo, Sarah, Chédeville, Gaëlle, Chetaille, Anne-Laure, Dancey, Paul, Duffy, Ciaran, Watanabe Duffy,

Journal:

Year:

2020

File:

PDF, 327 KB

2020

4

OPTIMALLY-CONNECTED HIDDEN MARKOV MODELS FOR PREDICTING MHC-BINDING PEPTIDES

ZHANG, CHENHONG, BICKIS, MIKELIS G., WU, FANG-XIANG, KUSALIK, ANTHONY J.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2006

Language:

english

File:

PDF, 465 KB

english, 2006

5

Serialization of process reduction in Concurrent Prolog

Anthony J. Kusalik

Journal:

New Generation Computing

Year:

1984

Language:

english

File:

PDF, 452 KB

english, 1984

6

Kinotypes: stable species- and individual-specific profiles of cellular kinase activity

Trost, Brett, Kindrachuk, Jason, Scruten, Erin, Griebel, Philip, Kusalik, Anthony, Napper, Scott

Journal:

Year:

2013

Language:

english

File:

PDF, 971 KB

english, 2013

7

A Multiplex RT-PCR Assay for the Simultaneous Identification of Neisseria gonorrhoeae and Its Ciprofloxacin Susceptibility Status

Perera, Sumudu R, Khan, Nurul H, Martin, Irene, Taheri, Ali, Parti, Rajinder P, Levett, Paul N, Horsman, Greg B, Kusalik, Anthony, Dillon, Jo-Anne R

Journal:

Journal of Clinical Microbiology

Year:

2017

Language:

english

File:

PDF, 676 KB

english, 2017

8

Comparing the Similarity of Different Groups of Bacteria to the Human Proteome

Trost, Brett, Pajon, Rolando, Jayaprakash, Teenus, Kusalik, Anthony, Donlin, Maureen J.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.70 MB

english, 2012

9

[BMJ Publishing Group Ltd Abstracts for the STI & HIV World Congress (Joint Meeting of the 23rd ISSTDR and 20th IUSTI), July 14â17, 2019, Vancouver, Canada - ()] Poster Presentations - P644âAnalyzing the genomes of neisseria gonorrhoeae isolates using a novel integrated bioinformatic pipeline: Gen2Epi

Parmar, Nidhi, Singh, Reema, Martin, Irene, Perera, Sumudu, Demczuk, Walter, Kusalik, Anthony, Minion, Jessica, Dillon, Jo-Anne

File:

PDF, 72 KB

10

[IEEE 2013 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Shanghai, China (2013.12.18-2013.12.21)] 2013 IEEE International Conference on Bioinformatics and Biomedicine - A multi-edge graph based de novo peptide sequencing method for HCD spectra

Yan, Yan, Kusalik, Anthony J., Wu, Fang-Xiang

Year:

2013

Language:

english

File:

PDF, 339 KB

english, 2013

11

Pentamers Not Found in the Universal Proteome Can Enhance Antigen Specific Immune Responses and Adjuvant Vaccines

Patel, Ami, Dong, Jessica C., Trost, Brett, Richardson, Jason S., Tohme, Sarah, Babiuk, Shawn, Kusalik, Anthony, Kung, Sam K. P., Kobinger, Gary P., Marques, Ernesto T.

Journal:

Year:

2012

Language:

english

File:

PDF, 920 KB

english, 2012

12

Peptide Arrays for Kinome Analysis of Livestock Species

Daigle, Joanna, Van Wyk, Brenden, Trost, Brett, Scruten, Erin, Arsenault, Ryan, Kusalik, Anthony, Griebel, Philip John, Napper, Scott

Journal:

Frontiers in Veterinary Science

Year:

2014

Language:

english

File:

PDF, 2.44 MB

english, 2014

13

Humanized yeast genetic interaction mapping predicts synthetic lethal interactions of FBXW7 in breast cancer

Kirzinger, Morgan W. B., Vizeacoumar, Frederick S., Haave, Bjorn, Gonzalez-Lopez, Cristina, Bonham, Keith, Kusalik, Anthony, Vizeacoumar, Franco J.

Journal:

BMC Medical Genomics

Year:

2019

Language:

english

File:

PDF, 2.92 MB

english, 2019

14

BoLA class I allele diversity and polymorphism in a herd of cattle

Shawn Babiuk, Benjamin Horseman, Chenhong Zhang, Mik Bickis, Anthony Kusalik, Lawrence B. Schook, Mitchell S. Abrahamsen, Reno Pontarollo

Journal:

Year:

2007

Language:

english

File:

PDF, 282 KB

english, 2007

15

Icola — Incremental Constraint-Based Graphics for Visualization

Gregory M. Oster, Anthony J. Kusalik

Journal:

Year:

1998

Language:

english

File:

PDF, 366 KB

english, 1998

16

STATE-SPACE MODEL WITH TIME DELAYS FOR GENE REGULATORY NETWORKS

WU, FANG-XIANG, ZHANG, W. J., KUSALIK, ANTHONY J.

Journal:

Journal of Biological System

Year:

2004

Language:

english

File:

PDF, 247 KB

english, 2004

17

Identification of Plasmodiophora brassicae effectors — A challenging goal

Pérez-López, Edel, Waldner, Matthew, Hossain, Musharaf, Kusalik, Anthony J., Wei, Yangdou, Bonham-Smith, Peta C., Todd, Christopher D.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.43 MB

english, 2018

18

Gen2EpiGUI

Singh, Reema, Yarmovich, Trevor, Kusalik, Anthony, Dillon, Jo-Anne R.

Journal:

Sexually Transmitted Diseases

Year:

2020

File:

PDF, 125 KB

2020

19

Rapamycin reduces fibroblast proliferation without causing quiescence and induces STAT5A/B-mediated cytokine production

Gillespie, Zoe E., MacKay, Kimberly, Sander, Michelle, Trost, Brett, Dawicki, Wojciech, Wickramarathna, Aruna, Gordon, John, Eramian, Mark, Kill, Ian R., Bridger, Joanna M., Kusalik, Anthony, Mitchell

Journal:

Nucleus (Landes Bioscience)

Year:

2015

Language:

english

File:

PDF, 3.18 MB

english, 2015

20

A Synthetic Kinome Microarray Data Generator

Maleki, Farhad, Kusalik, Anthony

Journal:

Year:

2015

Language:

english

File:

PDF, 307 KB

english, 2015

21

Sequence uniqueness and sequence variability as modulating factors of human anti-HCV humoral immune response

Darja Kanduc, Luciana Tessitore, Guglielmo Lucchese, Anthony Kusalik, Emanuel Farber, Francesco M. Marincola

Journal:

Cancer Immunology, Immunotherapy

Year:

2008

Language:

english

File:

PDF, 446 KB

english, 2008

22

Application of a Multi-Structure Neural Network (MSNN) to Sorting Pistachio Nuts

Ghazanfari, Ahmad, Kusalik, Anthony, Irudayaraj, Joseph

Journal:

International Journal of Neural Systems

Year:

1997

Language:

english

File:

PDF, 323 KB

english, 1997

23

Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools

Brett Trost, Mik Bickis, Anthony Kusalik

Journal:

Immunome Research

Year:

2007

Language:

english

File:

PDF, 278 KB

english, 2007

24

[IEEE 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Belfast, United Kingdom (2014.11.2-2014.11.5)] 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - NovoPair: De novo peptide sequencing for tandem mass spectra pair

Yan, Yan, Kusalik, Anthony J., Wu, Fang-Xiang

Year:

2014

Language:

english

File:

PDF, 272 KB

english, 2014

25

Bacterial peptides are intensively present throughout the human proteome

Trost, Brett, Kusalik, Anthony, Lucchese, Guglielmo, Kanduc, Darja

Journal:

Year:

2010

Language:

english

File:

PDF, 427 KB

english, 2010

26

MDIPA: A microRNA-drug interaction prediction approach based on nonnegative matrix factorization

Jamali, Ali Akbar, Kusalik, Anthony, Wu, Fang-Xiang, Gorodkin, Jan

Journal:

Year:

2020

File:

PDF, 514 KB

2020

27

Codon number shapes peptide redundancy in the universal proteome composition

Anthony Kusalik, Brett Trost, Mik Bickis, Candida Fasano, Giovanni Capone, Darja Kanduc

Journal:

Year:

2009

Language:

english

File:

PDF, 212 KB

english, 2009

28

[IEEE 2006 International Multi-Symposiums on Computer and Computational Sciences (IMSCCS) - Hangzhou, Zhejiang, China (2006.06.20-2006.06.24)] First International Multi-Symposiums on Computer and Computational Sciences (IMSCCS'06) - On Determination of Minimum Sample Size for Discovery of Temporal Gene Expression Patterns

Wu, Fang-Xiang, Zhang, W. J., Kusalik, Anthony J.

Year:

2006

Language:

english

File:

PDF, 244 KB

english, 2006

29

Transcriptome Analysis Identifies Plasmodiophora brassicae Secondary Infection Effector Candidates

Pérez‐López, Edel, Hossain, Md Musharaf, Tu, Jiangying, Waldner, Matthew, Todd, Christopher D., Kusalik, Anthony J., Wei, Yangdou, Bonham‐Smith, Peta C.

Journal:

Journal of Eukaryotic Microbiology

Year:

2020

File:

PDF, 21.13 MB

2020

30

Computational methods for predicting 3D genomic organization from high-resolution chromosome conformation capture data

MacKay, Kimberly, Kusalik, Anthony

Journal:

Briefings in Functional Genomics

Year:

2020

File:

PDF, 1.85 MB

2020

31

PIIKA 2: An Expanded, Web-Based Platform for Analysis of Kinome Microarray Data

Trost, Brett, Kindrachuk, Jason, Määttänen, Pekka, Napper, Scott, Kusalik, Anthony, Xue, Yu

Journal:

Year:

2013

Language:

english

File:

PDF, 1.44 MB

english, 2013

32

Bounded-wait merge in Shapiro’s Concurrent Prolog

Anthony J. Kusalik

Journal:

New Generation Computing

Year:

1984

Language:

english

File:

PDF, 534 KB

english, 1984

33

The oligodeoxynucleotide sequences corresponding to never-expressed peptide motifs are mainly located in the non-coding strand

Giovanni Capone, Giuseppe Novello, Candida Fasano, Brett Trost, Mik Bickis, Anthony Kusalik, Darja Kanduc

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 2.86 MB

english, 2010

34

Characterization of the Host Response to Pichinde Virus Infection in the Syrian Golden Hamster by Species-Specific Kinome Analysis

Falcinelli, Shane, Gowen, Brian B., Trost, Brett, Napper, Scott, Kusalik, Anthony, Johnson, Reed F., Safronetz, David, Prescott, Joseph, Wahl-Jensen, Victoria, Jahrling, Peter B., Kindrachuk, Jason

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 5.16 MB

english, 2015

35

No human protein is exempt from bacterial motifs, not even one

Trost, Brett, Lucchese, Guglielmo, Stufano, Angela, Bickis, Mik, Kusalik, Anthony, Kanduc, Darja

Journal:

Year:

2010

Language:

english

File:

PDF, 1.60 MB

english, 2010

36

Computational Analysis of the Predicted Evolutionary Conservation of Human Phosphorylation Sites

Trost, Brett, Kusalik, Anthony, Napper, Scott, Helmer-Citterich, Manuela

Journal:

Year:

2016

Language:

english

File:

PDF, 1.86 MB

english, 2016

37

Secondary storage in a concurrent logic programming environment

Anthony J. Kusalik

Journal:

Journal of Systems and Software

Year:

1990

Language:

english

File:

PDF, 1.64 MB

english, 1990

38

Specification and initialization of a logic computer system

Anthony J. Kusalik

Journal:

New Generation Computing

Year:

1986

Language:

english

File:

PDF, 1.13 MB

english, 1986

39

NovoExD: De novo peptide sequencing for ETD/ECD spectra

Yan, Yan, Kusalik, Anthony, Wu, Fangxiang

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 656 KB

english, 2015

40

Genes responsive to rapamycin and serum deprivation are clustered on chromosomes and undergo re-organization within local chromatin environments.

Belak, Zachery R., Pickering, Joshua A., Gillespie, Zoe E, Audette, Gerald F., Eramian, Mark, Mitchell, Jennifer A, Bridger, Joanna M., Kusalik, Anthony, Eskiw, Christopher H.

Journal:

Biochemistry and Cell Biology

Year:

2019

Language:

english

File:

PDF, 11.01 MB

english, 2019

41

Induction of ligand-specific PrP C signaling in human neuronal cells

Arsenault, Ryan J., Li, Yue, Potter, Andrew, Griebel, Philip J., Kusalik, Anthony, Napper, Scott

Journal:

Year:

2012

Language:

english

File:

PDF, 3.84 MB

english, 2012

42

De novo peptide sequencing using CID and HCD spectra pairs

Yan, Yan, Kusalik, Anthony J., Wu, Fang-Xiang

Journal:

Year:

2016

Language:

english

File:

PDF, 1.74 MB

english, 2016

43

Metformin induces the AP-1 transcription factor network in normal dermal fibroblasts

Gillespie, Zoe E., Wang, Chenxuan, Vadan, Flaviu, Yu, Topaza Y., Ausió, Juan, Kusalik, Anthony, Eskiw, Christopher H.

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 3.67 MB

english, 2019

44

Gene Set Analysis: Challenges, Opportunities, and Future Research

Maleki, Farhad, Ovens, Katie, Hogan, Daniel J., Kusalik, Anthony J.

Journal:

Frontiers in Genetics

Year:

2020

File:

PDF, 1.86 MB

2020

45

Determination of the minimum number of microarray experiments for discovery of gene expression patterns

Fang-Xiang Wu, WJ Zhang, Anthony J Kusalik

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 270 KB

english, 2006

46

Technological advances for interrogating the human kinome

Baharani, Akanksha, Trost, Brett, Kusalik, Anthony, Napper, Scott

Journal:

Biochemical Society Transactions

Year:

2017

Language:

english

File:

PDF, 689 KB

english, 2017

47

Evaluation of a Hydrogel-Based Diagnostic Approach for the Point-of-Care Based Detection of Neisseria gonorrhoeae

Perera, Sumudu, Taheri, Ali, Khan, Nurul, Parti, Rajinder, Stefura, Stephanie, Skiba, Pauline, Acker, Jason, Martin, Irene, Kusalik, Anthony, Dillon, Jo-Anne

Journal:

Year:

2018

Language:

english

File:

PDF, 271 KB

english, 2018

48

A Framework of De Novo Peptide Sequencing for Multiple Tandem Mass Spectra

Yan, Yan, Kusalik, Anthony J., Wu, Fang-Xiang

Journal:

IEEE Transactions on NanoBioscience

Year:

2015

Language:

english

File:

PDF, 1.05 MB

english, 2015

49

GrapHi-C: graph-based visualization of Hi-C datasets

MacKay, Kimberly, Kusalik, Anthony, Eskiw, Christopher H.

Journal:

BMC Research Notes

Year:

2018

Language:

english

File:

PDF, 2.01 MB

english, 2018

50

Antimicrobial resistance genetic factor identification from whole-genome sequence data using deep feature selection

Shi, Jinhong, Yan, Yan, Links, Matthew G., Li, Longhai, Dillon, Jo-Anne R., Horsch, Michael, Kusalik, Anthony

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 1.90 MB

english, 2019

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